The 2000-01 season saw Arsenal yet again lift the trophy after beating Tranmere Rovers at Chester City.  Fulham Ladies beat Birmingham City 7-1 to win the 2001-02 FA Premier League Cup Final, which was played at Wycombe Wanderers. The game was played in front of a vociferous crowd, with a packed press box and seven TV camera crews present.

In 2003, Fulham retained The FA Nationwide Premier League Cup for a second year by beating Arsenal on penalties.  The game at Swindon Town's County Ground finished 1-1 after late goals from Rachel Yankey and Ciara Grant and it was left the Fulham's Kim Jerray-Silver to score the decisive spot kick the clinch the silverware.

They returned to The Final again in 2004, but London rivals Charlton Athletic were the victors with a 1-0 win at Barnet's Underhill ground.

Charlton then reached The Final in 2005 and 2006 facing Arsenal on both occasions. First it was joy for the Gunners who ended up 3-0 winners, but 12 months later, an Eni Aluko brace gave Charlton a 2-1 victory at Wycombe Wanderers FC. 

Past Cup Finals 1993-present

1992-93: Arsenal 3 - Knowsley 0
1993-94: Arsenal 4 - Doncaster Belles 0
1994-95: Wimbledon 2 - Villa Aztecs 0
1995-96: Wembley 2 - Doncaster Belles 2
(Wembley won on penalties)
1996-97: Millwall 2 - Everton 1 
1997-98: Arsenal 0 - Croydon 0
(Arsenal won on penalties)
1998-99: Arsenal 3 - Everton 1
1999-00: Arsenal 4 - Croydon 1
2000-01: Arsenal 3 - Tranmere Rovers 0
2001-02: Fulham 7 - Birmingham City  1
2002-03: Arsenal 1 - Fulham 1 (Fulham won on penalties)
2003-04: Charlton 1 - Fulham 0
2004-05: Charlton Athletic 0-3 Arsenal (match report and video)
2005-06: Arsenal 1 - Charlton Athletic 2
2006-07: Leeds United 0-1 Arsenal